Looking at file church.scm from the provided zip file [1], I see the following functions used to construct lists:

    (define kons
      (lambda (x) (lambda (y) ((pair false) ((pair false) ((pair x) y))))))
    
    (define kar   (lambda (x) (first (second (second x)))))
    (define kdr   (lambda (x) (second (second (second x)))))
    
    (define nil   ((pair true) ((pair true) false)))
    (define null  first)
    
    (define atom  (lambda (x) (first (second x))))

That's 2 extra booleans per list element. While the one for recognizing atoms is probably necessary, the other one for recognizing nil is not:

    (define kons
      (lambda (x) (lambda (y) ((pair false) ((pair x) y)))))
    
    (define kar   (lambda (x) (first (second x))))
    (define kdr   (lambda (x) (second (second x))))
    
    (define nil ((pair true) false))
    (define null (lambda (x) (((second x) (lambda (a) (lambda (d) (lambda (z) false)))) true)))
    
    (define atom  (lambda (x) (first x)))

The use of null+car+cdr can usually be avoided by using a matching construct instead like

    (((second list) (lambda (a) (lambda (d) (lambda (z) deal_with_car_a_and_cdr_d ) deal_with_nil)

[1] https://t3x.org/lfn/church.zip