I just want to point out a few things you may overlooked. First, the bot config gets updated every 5 minutes, not in seconds. Second, they have config checks in other places already ("Hardening ingestion of Cloudflare-generated configuration files in the same way we would for user-generated input").
They could probably even align everything in CI/CD if they'd run the config verifier where the configs are generated. This is of course all hindsight blind guessing, but you make it sound a bit arcane and impossible to do anything.